Stem-loop sequence bta-mir-302d

Accession

MI0009792 (change log)

Description

Bos taurus miR-302d stem-loop

Gene family

MIPF0000071; mir-302

Literature search

4 open access papers mention bta-mir-302d
(10 sentences)

Stem-loop

   c  c    uu                -----c    a 
5'  cu uacu  aacauggaggcacuug      ugug c
    || ||||  ||||||||||||||||      ||||  
3'  gg guga  uuguaccuucgugaau      auac u
   -  c    uu                aaaaaa    u 

Deep sequencing

4 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr6: 14305944-14306013 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000012693 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from bta-mir-302d

• bta-mir-302b: chr6: 14305231-14305305 [+]
• bta-mir-302c: chr6: 14305374-14305441 [+]
• bta-mir-302a: chr6: 14305767-14305836 [+]
• bta-mir-302d: chr6: 14305944-14306013 [+]
• bta-mir-367: chr6: 14306070-14306137 [+]

Database links

• EntrezGene:MIR302D
• miRBase Tracker:MI0009792

Mature sequence bta-miR-302d

• Accession: MIMAT0009279
• Sequence: 46 - uaagugcuuccauguuuuagu - 66
• Deep sequencing: 4 reads, 4 experiments
• Evidence: by similarity; MI0010353
• Predicted targets:
  • TargetScanVert:bta-miR-302d

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).