Stem-loop sequence bta-mir-302c

Accession

MI0009794 (change log)

Description

Bos taurus miR-302c stem-loop

Gene family

MIPF0000071; mir-302

Literature search

5 open access papers mention bta-mir-302c
(21 sentences)

Stem-loop

       ug  uu             c    -g  u 
5' ccuc  cu  aacauggggguac ugcu  ug a
   ||||  ||  ||||||||||||| ||||  || a
3' ggag  ga  uuguaccuucgug auga  ac a
       gu  cu             a    aa  g 

Deep sequencing

5 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr6: 14305374-14305441 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000012693 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from bta-mir-302c

• bta-mir-302b: chr6: 14305231-14305305 [+]
• bta-mir-302c: chr6: 14305374-14305441 [+]
• bta-mir-302a: chr6: 14305767-14305836 [+]
• bta-mir-302d: chr6: 14305944-14306013 [+]
• bta-mir-367: chr6: 14306070-14306137 [+]

Database links

• EntrezGene:MIR302C
• miRBase Tracker:MI0009794

Mature sequence bta-miR-302c

• Accession: MIMAT0009281
• Sequence: 43 - uaagugcuuccauguuucagugg - 65
• Deep sequencing: 5 reads, 5 experiments
• Evidence: by similarity; MI0010352
• Predicted targets:
  • TargetScanVert:bta-miR-302c

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).