Stem-loop bta-mir-340

Accession

MI0009809

Description

Bos taurus bta-mir-340 precursor miRNA

Literature search

2 open access papers mention bta-mir-340
(4 sentences)

Sequence

20667 reads, 192 reads per million, 74 experiments

uuguaccuggugugauuauaaagcaaugagacugauugucaugugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccugguaucuua
..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure

--uu     u      a        -caa      u    g     ug 
    guacc ggugug uuauaaag    ugagac gauu ucaug  u
    ||||| |||||| ||||||||    |||||| |||| |||||  c
    uaugg ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
auuc     u      C        AUUG      C    -     uu 

Annotation confidence High

Genome context

chr7: 1160917-1161011 [+]

Mature bta-miR-340

• Accession: MIMAT0009296
• Description: Bos taurus bta-miR-340 mature miRNA
• Sequence: 58 - UCCGUCUCAGUUACUUUAUAGCC - 80
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125