miRBase entry: bta-mir-377

Stem-loop bta-mir-377


Accession
MI0009818
Description
Bos taurus bta-mir-377 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
2 open access papers mention bta-mir-377
(2 sentences)

Sequence

96 reads, 11 reads per million, 36 experiments
uugagcagagguugcccuuggugaauucgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGUuug
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure
uu              c   -    a    - uuu 
  gagcagagguugcc uug guga uucg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 


Annotation confidence High
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Genome context
chr21: 67878863-67878931 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from bta-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-377

Accession MIMAT0009304
Description Bos taurus bta-miR-377 mature miRNA
Sequence 45 - AUCACACAAAGGCAACUUUUGU - 66
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125