Stem-loop bta-mir-409a

Accession

MI0009824

Description

Bos taurus bta-mir-409a precursor miRNA

Literature search

6 open access papers mention bta-mir-409a
(10 sentences)

Sequence

1609258 reads, 846.0 reads per million, 318 experiments

ugguacgcggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCUUuucgguauca
((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))

Structure

      g       A    AC         -    - AUc 
ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
|||||| ||||||| ||||  ||||||||| |||| |    
acuaug gcuuUUC CCAA  GGCUCGUUG AAGc g   g
      -       C    GU         U    a cag 

Annotation confidence High

Genome context

21: 65953893-65953971 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from bta-mir-409a

Mature bta-miR-409a-5p

• Accession: MIMAT0009310
• Description: Bos taurus bta-miR-409a-5p mature miRNA
• Sequence: 15 - AGGUUACCCGAGCAACUUUGCAU - 37
• Evidence: experimental ; cloned [3]

Mature bta-miR-409a-3p

• Accession: MIMAT0061013
• Description: Bos taurus bta-miR-409a-3p mature miRNA
• Sequence: 47 - GAAUGUUGCUCGGUGAACCCCUU - 69
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125