miRBase entry: bta-mir-409a

Stem-loop bta-mir-409a


Accession
MI0009824
Description
Bos taurus bta-mir-409a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
4 open access papers mention bta-mir-409a
(8 sentences)

Sequence

33620 reads, 378 reads per million, 64 experiments
ugguacgcggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacgaauguugcucggugaaccccuuuucgguauca
((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))

Structure
      g       A    AC         -    - AUc 
ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
|||||| ||||||| ||||  ||||||||| |||| |    
acuaug gcuuuuc ccaa  ggcucguug aagc g   g
      -       c    gu         u    a cag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 67881619-67881697 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from bta-mir-409a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-409a

Accession MIMAT0009310
Description Bos taurus bta-miR-409a mature miRNA
Sequence 15 - AGGUUACCCGAGCAACUUUGCAU - 37
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125