Stem-loop bta-mir-410

Accession

MI0009825

Description

Bos taurus bta-mir-410 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

2 open access papers mention bta-mir-410
(3 sentences)

Sequence

21606 reads, 224 reads per million, 63 experiments

ggguacuugaggagagguugucugugaugaguucgcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaguacca
.((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).))))))))))).

Structure

g      u     g            a  a     - uuu 
 gguacu gagga agguugucugug ug guucg c   a
 |||||| ||||| |||||||||||| || ||||| |   u
 ccauga cuuuU UCCGGUAGACAC AU UAAgc g   u
a      -     G            A  A     a uaa 

Annotation confidence Not enough data

Genome context

chr21: 67882238-67882318 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from bta-mir-410

Mature bta-miR-410

• Accession: MIMAT0009311
• Description: Bos taurus bta-miR-410 mature miRNA
• Sequence: 50 - AAUAUAACACAGAUGGCCUGU - 70
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125