Stem-loop bta-mir-454

Accession

MI0009840

Description

Bos taurus bta-mir-454 precursor miRNA

Literature search

1 open access papers mention bta-mir-454
(1 sentences)

Sequence

1707 reads, 19 reads per million, 66 experiments

cuguuuauuaccagauccuagaacccuaucgauauugucucugcuguguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUuuugguguuugggaagaacaaugggcaug
.(((((....((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).))))))...))))).........

Structure

--------c     auua      c            ---         ----   --u     g 
         uguuu    ccagau cuagaacccuau   cgauauugu    cuc   gcugu u
         |||||    |||||| ||||||||||||   |||||||||    |||   |||||  
         acaag    gguuug gguuuUGGGAUA   GUUAUAACG    gag   cgaua a
guacgggua     -aag      u            UUC         UGAU   ucu     a 

Annotation confidence High

Genome context

chr19: 10438492-10438605 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-454

Mature bta-miR-454

• Accession: MIMAT0009326
• Description: Bos taurus bta-miR-454 mature miRNA
• Sequence: 63 - UAGUGCAAUAUUGCUUAUAGGGU - 85
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125