miRBase entry: bta-mir-490

Stem-loop bta-mir-490


Accession
MI0009845
Description
Bos taurus bta-mir-490 precursor miRNA
Gene family
MIPF0000229; mir-490

Literature search
1 open access papers mention bta-mir-490
(1 sentences)

Sequence

7233 reads, 96 reads per million, 63 experiments
uggagacuugcugguuuggaaaguucauuguucgacaccauggaucuccaggugggucacguuuagagauacacCAACCUGGAGGACUCCAUGCUGuugagcuguucacaagcagcggacacuucua
.((((..((((((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).))))))))))...))))..

Structure
-u    -ac      g    -   aguucauu        c      --         g   cac  uua 
  ggag   uugcug uuug gaa        guucgaca caugga  ucuccaggu ggu   gu   g
  ||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   ||    
  cuuc   ggcgac gaac cuu        cgaguuGU GUACCU  GGAGGUCCA Cca   ca   a
au    aca      -    a   ------gu        C      CA         A   ---  uag 


Annotation confidence High
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Genome context
chr4: 101783304-101783430 [+]

Database links

Mature bta-miR-490

Accession MIMAT0009331
Description Bos taurus bta-miR-490 mature miRNA
Sequence 75 - CAACCUGGAGGACUCCAUGCUG - 96
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125