Stem-loop bta-mir-496

Accession

MI0009850

Description

Bos taurus bta-mir-496 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention bta-mir-496
(3 sentences)

Sequence

57 reads, 3 reads per million, 36 experiments

ccgagucggguacucgaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucaguacuaaauucuucauggg
..((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))........

Structure

------cc    cg      c   u        u     gu         uua 
        gagu  gguacu gaa ggagguug ccaug  guguucauu   u
        ||||  |||||| ||| |||||||| |||||  |||||||||    
        cuua  ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
ggguacuu    aa      -   u        C     AU         uau 

Annotation confidence Not enough data

Genome context

chr21: 67877242-67877342 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-496

Mature bta-miR-496

• Accession: MIMAT0009336
• Description: Bos taurus bta-miR-496 mature miRNA
• Sequence: 55 - UGAGUAUUACAUGGCCAAUCUC - 76
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125