Stem-loop sequence bta-mir-502b

Accession

MI0009854 (change log)

Description

Bos taurus miR-502b stem-loop

Gene family

MIPF0000139; mir-500

Literature search

2 open access papers mention bta-mir-502b
(3 sentences)

Stem-loop

       c - uc  -u         ucc       a  g   uuu 
5' gcuc c c  uc  aauucuugc   ccaggug ga ugc   g
   |||| | |  ||  |||||||||   ||||||| || |||   u
3' cgag g g  ag  uuaggaacg   gguccac cu acg   g
       a u ua  uc         ---       -  a   uaa 

Deep sequencing

13041 reads, 188 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 93946864-93946946 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-502b

• bta-mir-502a-2: chrX: 93942730-93942819 [+]
• bta-mir-502b: chrX: 93946864-93946946 [+]
• bta-mir-362: chrX: 93947354-93947418 [+]
• bta-mir-500: chrX: 93948610-93948693 [+]
• bta-mir-660: chrX: 93950762-93950841 [+]
• bta-mir-502a-1: chrX: 93952708-93952792 [+]

Database links

• EntrezGene:MIR502B
• miRBase Tracker:MI0009854

Mature sequence bta-miR-502b

• Accession: MIMAT0009339
• Sequence: 50 - aauccaccugggcaaggauuc - 70
• Deep sequencing: 12942 reads, 77 experiments
• Evidence: by similarity; MI0003186
• Predicted targets:
  • TargetScanVert:bta-miR-502b

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).