miRBase entry: bta-mir-543

Stem-loop bta-mir-543


Accession
MI0009859
Description
Bos taurus bta-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
1 open access papers mention bta-mir-543
(1 sentences)

Sequence

322 reads, 10 reads per million, 50 experiments
ggugcuuaaggagaaguugcccgugucuuuuucgcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUuuucaguauc
((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))

Structure
      u          u  -     ucuu     - uuu 
ggugcu aaggagaagu gc ccgug    uuucg c   a
|||||| |||||||||| || |||||    ||||| |   u
cuauga uuuUUCUUCA CG GGCGC    AAAgc g   a
      c          -  U     UUAC     a ugu 


Annotation confidence High
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Genome context
chr21: 67850198-67850277 [+]
Clustered miRNAs
22 other miRNAs are < 10 kb from bta-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-543

Accession MIMAT0009344
Description Bos taurus bta-miR-543 mature miRNA
Sequence 49 - AAACAUUCGCGGUGCACUUCUU - 70
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125