miRBase entry: bta-mir-544a

Stem-loop bta-mir-544a


Accession
MI0009862
Description
Bos taurus bta-mir-544a precursor miRNA
Gene family
MIPF0000436; mir-544

Literature search
1 open access papers mention bta-mir-544a
(5 sentences)

Sequence

89 reads, 8 reads per million, 42 experiments
auuuucaucaccuagggaucuuguuaaaaggcagauucugauucagggaccaagAUUCUGCAUUUUUAGCAAGUUCccaagugaugcuaau
.....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..)))))).....

Structure
auuuu      cua    u           -     u   gauuc 
     caucac   ggga cuuguuaaaag gcaga ucu     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
uaauc      -aa    U           A     U   accag 


Annotation confidence Not enough data
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Genome context
chr21: 67864731-67864821 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from bta-mir-544a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-544a

Accession MIMAT0009346
Description Bos taurus bta-miR-544a mature miRNA
Sequence 55 - AUUCUGCAUUUUUAGCAAGUUC - 76
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125