miRBase entry: bta-mir-551b

Stem-loop bta-mir-551b


Accession
MI0009864
Description
Bos taurus bta-mir-551b precursor miRNA
Gene family
MIPF0000360; mir-551


Sequence

4 reads, 1 reads per million, 4 experiments
agagaaguucuccuggccuaagaaaucaagcgugggugagaccuggugcagaacaggaaGGCGACCCAUACUUGGUUUCAGaggcugugagaaua
......((((((.((((((..(((((((((.((((((....((((........))))......)))))).)))))))))..)))))).)))))).

Structure
agagaa      c      aa         c      --gaga    gug 
      guucuc uggccu  gaaaucaag gugggu      ccug   c
      |||||| ||||||  ||||||||| ||||||      ||||    
      uaagag gucgga  CUUUGGUUC UACCCA      ggac   a
-----a      u      GA         A      GCGGaa    aag 


Annotation confidence Not enough data
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Genome context
chr1: 100049884-100049978 [-]

Database links

Mature bta-miR-551b

Accession MIMAT0009348
Description Bos taurus bta-miR-551b mature miRNA
Sequence 60 - GGCGACCCAUACUUGGUUUCAG - 81
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125