Stem-loop sequence bta-mir-615

Accession

MI0009877 (change log)

Description

Bos taurus miR-615 stem-loop

Gene family

MIPF0000342; mir-615

Literature search

3 open access papers mention bta-mir-615
(5 sentences)

Stem-loop

   cuc   ag   c          uc     u        cu    g ug 
5'    ggg  ggg gggagggggg  cccgg gcucggau  cgag g  c
      |||  ||| ||||||||||  ||||| ||||||||  |||| |  u
3'    ccc  ccc cccucucccu  ggguc cgagccug  gcuu u  u
   --c   ca   -          cu     -        --    g ua 

Deep sequencing

2028 reads, 2.99 reads per million, 67 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 26204589-26204681 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000012696 ; HOXC5-201; intron 1

Database links

• EntrezGene:MIR615
• miRBase Tracker:MI0009877

Mature sequence bta-miR-615

• Accession: MIMAT0009355
• Sequence: 18 - ggggguccccggugcucggauc - 39
• Deep sequencing: 70 reads, 31 experiments
• Evidence: by similarity; MI0003628
• Predicted targets:
  • TargetScanVert:bta-miR-615

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).