miRNA Entry for MI0009885

Stem-loop sequence bta-mir-665

Accession

MI0009885 (change log)

Description

Bos taurus miR-665 stem-loop

Gene family

MIPF0000404; mir-665

Literature search

1 open access papers mention bta-mir-665
(1 sentences)

Stem-loop

   -  u   -                -   cc  g  c 
5'  uc ccu ugaggggucuuggccu cug  ca ga u
    || ||| |||||||||||||||| |||  || || c
3'  gg gga acuccccggagccgga gac  gu cu u
   c  c   c                u   ca  a  u

Get sequence

Deep sequencing

3563 reads, 0 reads per million, 63 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Btau_5.0.1; GCA_000003205.6)	Overlapping transcripts
chr21: 67702209-67702280 [+]	sense ENSBTAT00000051765 ; bta-mir-665-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-665
bta-mir-493	chr21: 67695365-67695453 [+]
bta-mir-665	chr21: 67702209-67702280 [+]
bta-mir-431	chr21: 67706530-67706643 [+]
bta-mir-433	chr21: 67707406-67707529 [+]
bta-mir-127	chr21: 67708504-67708598 [+]
bta-mir-432	chr21: 67709994-67710083 [+]
bta-mir-136	chr21: 67710178-67710269 [+]

Database links

EntrezGene:MIR665
miRBase Tracker:MI0009885

Mature sequence bta-miR-665
Accession	MIMAT0009363
Sequence	43 - accaguaggccgaggccccu - 62 Get sequence
Deep sequencing	3530 reads, 63 experiments
Evidence	by similarity; MI0005563
Predicted targets	TargetScanVert:bta-miR-665

References
1	PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).

miRBase

Stem-loop sequence bta-mir-665

Mature sequence bta-miR-665

References