Stem-loop sequence bta-mir-708

Accession

MI0009889 (change log)

Description

Bos taurus miR-708 stem-loop

Gene family

MIPF0000397; mir-708

Literature search

7 open access papers mention bta-mir-708
(10 sentences)

Stem-loop

   cugugugugaagu   aa        a           a     c  g ------g    a 
5'              ggu  cugcccuc aggagcuuaca ucuag ug g       guaa c
                |||  |||||||| ||||||||||| ||||| || |       |||| g
3'              cca  gacgggag ucuucgagugu agauc ac c       cguu a
   ----------auu   gg        a           c     u  g aaguaca    c 

Deep sequencing

13044 reads, 93.7 reads per million, 63 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr29: 16770523-16770631 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR708
• miRBase Tracker:MI0009889

Mature sequence bta-miR-708

• Accession: MIMAT0009367
• Sequence: 27 - aaggagcuuacaaucuagcuggg - 49
• Deep sequencing: 2459 reads, 63 experiments
• Evidence: by similarity; MI0004692
• Predicted targets:
  • TargetScanVert:bta-miR-708

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).