miRBase entry: mmu-mir-1946a

Stem-loop mmu-mir-1946a


Accession
MI0009936
Symbol
MGI: Mir1946a
Description
Mus musculus mmu-mir-1946a precursor miRNA

Literature search
1 open access papers mention mmu-mir-1946a
(1 sentences)

Sequence

299 reads, 416 reads per million, 60 experiments
aacuuaaagaaaucuauAGCCGGGCAGUGGUGGCACACACUUUUaaucccaacacuugugaggcacaggcagguggauuucugaucaaaggcaugcgccaccacucucggcuuucuccucuccuuuuuuguuaa
.......(((.......(((((((.(((((((((.((..(((((.(((....(((((((.........))))))).......))).)))))..)).))))))))))))))))......))).............

Structure
------aacuuaa   aaucuau       C         A  CA     a   ---ccaa       gag 
             aga       AGCCGGG AGUGGUGGC CA  CUUUU auc       cacuugu   g
             |||       ||||||| ||||||||| ||  ||||| |||       |||||||   c
             ucu       ucggcuc ucaccaccg gu  ggaaa uag       guggacg   a
aauuguuuuuucc   -ccucuu       -         c  ac     c   ucuuuag       gac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr16: 32267450-32267583 [-]

Database links

Mature mmu-miR-1946a

Accession MIMAT0009412
Description Mus musculus mmu-miR-1946a mature miRNA
Sequence 18 - AGCCGGGCAGUGGUGGCACACACUUUU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18849523
    In-depth characterization of the microRNA transcriptome in a leukemia progression model
    "Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
    "Genome Res (2008) 18:1787-1797