miRBase entry: sly-MIR156a

Stem-loop sly-MIR156a


Accession
MI0009971
Description
Solanum lycopersicum sly-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
33 open access papers mention sly-MIR156a
(179 sentences)

Sequence

UUGACAGAAGAUAGAGAGCACuaaugaugauaugcuaauuucauucaauuugggcagcaaaagcaucucaauucauuugugcucucuaugcuucugucau
.((((((((((((((((((((.((((((((.(((((............((((.....))))))))).)))..))))).))))))))))).))))))))).

Structure
U         -           u     --   u     aauuucauucaa    g 
 UGACAGAAG AUAGAGAGCAC aauga  uga augcu            uuug g
 ||||||||| ||||||||||| |||||  ||| |||||            |||| c
 acugucuuc uaucucucgug uuacu  acu uacga            aaac a
u         g           u     ua   c     ------------    g 


Annotation confidence Not enough data
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Comments
This sequence was named MIR157a in [1].

Genome context
chr6: 42851776-42851875 [-]

Database links

Mature sly-miR156a

Accession MIMAT0009138
Description Solanum lycopersicum sly-miR156a mature miRNA
Sequence 1 - UUGACAGAAGAUAGAGAGCAC - 21
Evidence not_experimental

References

  1. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7