miRBase entry: sly-MIR162

Stem-loop sly-MIR162


Accession
MI0009975
Description
Solanum lycopersicum sly-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
9 open access papers mention sly-MIR162
(18 sentences)

Sequence

caggaggcagcgguaccauugauccguucccuggaagcugaauauauauauacgcaacauuacagcaaaaggaaucggUCGAUAAACCUCUGCAUCCAG
..(((.((((.(((...(((((.(((...(((....(((((((...............))).))))...)))...))))))))..))).)))).)))..

Structure
ca   g    c   acc     u   uuc   ggaa    -   auauau 
  gga gcag ggu   auuga ccg   ccu    gcug aau      a
  ||| |||| |||   ||||| |||   |||    |||| |||      u
  CCU CGUC CCA   UAGCU ggc   gga    cgac uua      a
GA   A    U   -AA     -   uaa   -aaa    a   caacgc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sly-miR162

Accession MIMAT0009142
Description Solanum lycopersicum sly-miR162 mature miRNA
Sequence 79 - UCGAUAAACCUCUGCAUCCAG - 99
Evidence not_experimental

References

  1. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7