Stem-loop jcv-mir-J1

Accession

MI0009980

Description

JC polyomavirus jcv-mir-J1 precursor miRNA

Gene family

MIPF0000637; mir-B1

Sequence

ucugcaccagaggcUUCUGAGACCUGGGAAAAGCAUugugauugugauucagUGCUUGAUCCAUGUCCAGAGUCuucugcuucaga
((((...((((((.(((((.(((.((((..((((((((...........))))))))..)))).)))))))).))))))...))))

Structure

    cac      c     A   C    AA        ugau 
ucug   cagagg UUCUG GAC UGGG  AAGCAUug    u
||||   |||||| ||||| ||| ||||  ||||||||    g
agac   gucuuC GAGAC CUG ACCU  UUCGUgac    u
    uuc      U     -   U    AG        uuag 

Annotation confidence Not enough data

Genome context

Unknown

Mature jcv-miR-J1-5p

• Accession: MIMAT0009147
• Description: JC polyomavirus jcv-miR-J1-5p mature miRNA
• Sequence: 15 - UUCUGAGACCUGGGAAAAGCAU - 36
• Evidence: experimental ; cloned [1], Northern [1]

Mature jcv-miR-J1-3p

• Accession: MIMAT0009148
• Description: JC polyomavirus jcv-miR-J1-3p mature miRNA
• Sequence: 53 - UGCUUGAUCCAUGUCCAGAGUC - 74
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18684810
   Evolutionarily conserved function of a viral microRNA
   "Seo GJ, Fink LH, O'Hara B, Atwood WJ, Sullivan CS"
   "J Virol (2008) 82:9823-9828