miRBase entry: bfl-mir-1

Stem-loop bfl-mir-1


Accession
MI0010008
Description
Branchiostoma floridae bfl-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

ccaggccuguuaagcauAAGUACUUCUUUACUAUCCCAUacugaacucaauuguaUGGAAUGUAAAGAAGUAUGUAUgguuagcaggcuaccacgu
...((((((((((.((((.((((((((((((.((.((((((...........)))))).)))))))))))))).)))).)))))))))).......

Structure
----cca          g    A            U  C      ugaa 
       ggccuguuaa cauA GUACUUCUUUAC AU CCAUac    c
       |||||||||| |||| |||||||||||| || ||||||    u
       ucggacgauu gUAU UAUGAAGAAAUG UA GGUaug    c
ugcacca          g    G            -  A      uuaa 


Annotation confidence Not enough data
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Genome context
GG666601.1: 1444175-1444270 [+]

Database links

Mature bfl-miR-1-3p

Accession MIMAT0009463
Description Branchiostoma floridae bfl-miR-1-3p mature miRNA
Sequence 56 - UGGAAUGUAAAGAAGUAUGUAU - 77
Evidence experimental
454 [1]

Mature bfl-miR-1-5p

Accession MIMAT0019137
Description Branchiostoma floridae bfl-miR-1-5p mature miRNA
Sequence 18 - AAGUACUUCUUUACUAUCCCAU - 39
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27