miRBase entry: bfl-mir-34a

Stem-loop bfl-mir-34a


Accession
MI0010019
Description
Branchiostoma floridae bfl-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

ugguuaccuguguguugcugUGGCAGUGUGGAUAGCUGGCCGUUUcuaauauaacagccacuguacacacucccguaauaacacacggacuuacaacacgg
.......((((((((((.(((((.((((((.((((.((((.(((........))).)))))))).)))))).))))).)))))))))).............

Structure
------ugguuac          c     C      G    C    C   Ucu 
             cuguguguug ugUGG AGUGUG AUAG UGGC GUU   a
             |||||||||| ||||| |||||| |||| |||| |||    
             ggcacacaau augcc ucacac uguc accg caa   a
ggcacaacauuca          a     c      a    -    a   uau 


Annotation confidence Not enough data
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Genome context
GG666685.1: 1087742-1087842 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bfl-mir-34a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-34a

Accession MIMAT0009475
Description Branchiostoma floridae bfl-miR-34a mature miRNA
Sequence 21 - UGGCAGUGUGGAUAGCUGGCCGUUU - 45
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68