miRBase entry: bfl-mir-200a

Stem-loop bfl-mir-200a


Accession
MI0010035
Description
Branchiostoma floridae bfl-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

gacauguuagcuugauuccugacaucuuacuuggcagcauucgauguguuuccauauucAAAUACUGCCUGGUAAUGAUGCcagucaaguuuccucacagu
.....(..(((((((...(((.(((((((((.(((((.(((.((((((....))))))..))).))))).))))).)))).))))))))))..).......

Structure
--gacau uu       uuc   a    -     u     c   -c      u 
       g  agcuuga   cug cauc uuacu ggcag auu  gaugug u
       |  |||||||   ||| |||| ||||| ||||| |||  ||||||  
       c  uugaacu   gac GUAG AAUGG CCGUC UAA  uuauac u
ugacacu cu       ---   C    U     U     A   Ac      c 


Annotation confidence Not enough data
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Genome context
GG666627.1: 361501-361601 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bfl-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-200a

Accession MIMAT0009491
Description Branchiostoma floridae bfl-miR-200a mature miRNA
Sequence 60 - AAAUACUGCCUGGUAAUGAUGC - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68