Stem-loop bfl-mir-200c

Accession

MI0010037

Description

Branchiostoma floridae bfl-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

aucuaacauggcggaguugugucaucuuaccuggcagguuuagaugguucugggaucUAACACUGUCUGGUAAUGAUGacgggacuccgcacaua
.......(((((((((((.((((((((((((.(((((..((((((.........))))))..))))).))))).))))))).)))))))).))).

Structure

aucuaac   -        g       -     u     gu      ggu 
       aug gcggaguu ugucauc uuacc ggcag  uuagau   u
       ||| |||||||| ||||||| ||||| |||||  ||||||   c
       uac cgccucag gcaGUAG AAUGG CUGUC  AAUcua   u
------a   a        g       U     U     AC      ggg 

Annotation confidence Not enough data

Genome context

GG666627.1: 358765-358859 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bfl-mir-200c

Mature bfl-miR-200c

• Accession: MIMAT0009493
• Description: Branchiostoma floridae bfl-miR-200c mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAUGAUG - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68