miRBase entry: bfl-mir-216

Stem-loop bfl-mir-216


Accession
MI0010039
Description
Branchiostoma floridae bfl-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

ugguugugUAAUCUCAGCUGGCAACUGUGAGucuaacuucacauccuCACGGUGCAAGCUGGGAUCGCUcaaacu
...(((.((.(((((((((.(((.(((((((..............)))))))))).))))))))).)).)))...

Structure
ugg   u  A         G   A       ucuaac 
   uug gU AUCUCAGCU GCA CUGUGAG      u
   ||| || ||||||||| ||| |||||||       
   aac CG UAGGGUCGA CGU GGCACuc      u
uca   U  C         A   -       cuacac 


Annotation confidence Not enough data
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Genome context
GG666479.1: 961712-961786 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-216
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-216-5p

Accession MIMAT0009495
Description Branchiostoma floridae bfl-miR-216-5p mature miRNA
Sequence 9 - UAAUCUCAGCUGGCAACUGUGAG - 31
Evidence experimental
454 [1]

Mature bfl-miR-216-3p

Accession MIMAT0019150
Description Branchiostoma floridae bfl-miR-216-3p mature miRNA
Sequence 48 - CACGGUGCAAGCUGGGAUCGCU - 69
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27