miRBase entry: cte-mir-1

Stem-loop cte-mir-1


Accession
MI0010046
Description
Capitella teleta cte-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

accggcgugcgauugugacauacuuccuuacaacgccauauuucccauauuauugguaUGGAAUGUAAAGAAGUAUGUAGcauucccaugcacu
....(((((.((.(((.(((((((((.(((((...(((((....(((......))))))))..))))).))))))))).))).)).)))))...

Structure
accg     c  u   g         c     acg     uuuc   ua 
    gcgug ga ugu acauacuuc uuaca   ccaua    cca  u
    ||||| || ||| ||||||||| |||||   |||||    |||   
    cguac cu acG UGUAUGAAG AAUGU   GGUau    ggu  u
-uca     c  u   A         A     -AA     ----   ua 


Annotation confidence Not enough data
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Genome context
KB301107.1: 105938-106031 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-mir-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-1

Accession MIMAT0009502
Description Capitella teleta cte-miR-1 mature miRNA
Sequence 59 - UGGAAUGUAAAGAAGUAUGUAG - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68