miRBase entry: cte-mir-34

Stem-loop cte-mir-34


Accession
MI0010060
Description
Capitella teleta cte-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

cagccacugcuuguguuucgcUGGCAGUGUGGUUAGCUGGUUGUgaauuaauagauacaacaaccacuagcucuacugccugggaaauacaaaauuauguc
..........(((((((((.(.(((((((.((((((.(((((((...............))))))))))))).))))))).).))))))))).........

Structure
cagccacugc         g U       U      C       gaauua 
          uuguguuuc c GGCAGUG GGUUAG UGGUUGU      a
          ||||||||| | ||||||| |||||| |||||||      u
          aacauaaag g ccgucau ucgauc accaaca      a
-cuguauuaa         g u       c      -       acauag 


Annotation confidence Not enough data
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Genome context
KB292771.1: 443325-443425 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cte-mir-34
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-34

Accession MIMAT0009516
Description Capitella teleta cte-miR-34 mature miRNA
Sequence 22 - UGGCAGUGUGGUUAGCUGGUUGU - 44
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68