miRBase entry: cte-mir-100

Stem-loop cte-mir-100


Accession
MI0010068
Description
Capitella teleta cte-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

aaugucugccaaguagcgggAACCCGUACAACCGAACUUGUGuuuucugcgaaagaccacaagcucgcuuuuacgggugugcguugcugugggccucucgg
...((((((..(((((((.(.(((((((.((.(((.((((((...(((.....))).)))))).))).)).))))))).).))))))))))))).......

Structure
----aau      ca       g A       C  C   A      uuu   g 
       gucugc  aguagcg g ACCCGUA AA CGA CUUGUG   ucu c
       ||||||  ||||||| | ||||||| || ||| ||||||   ||| g
       cgggug  ucguugc u ugggcau uu gcu gaacac   aga a
ggcucuc      --       g g       u  c   c      --c   a 


Annotation confidence Not enough data
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Genome context
KB294122.1: 267073-267173 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-100

Accession MIMAT0009524
Description Capitella teleta cte-miR-100 mature miRNA
Sequence 21 - AACCCGUACAACCGAACUUGUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68