miRBase entry: cte-mir-317

Stem-loop cte-mir-317


Accession
MI0010086
Description
Capitella teleta cte-mir-317 precursor miRNA


Sequence

cggaaggagaagcgucgagcgcaggcaagagaucacugcggugcucacauguagccacugUGAACACAGCUGGUGGUAUCUCUUUucuucgcucugaccug
..........((.((((((((.(((.(((((((((((((.(((.(((((.((....))))))).))).)).))))..))))))).))).))))).))))).

Structure
cggaaggaga  c   -     c   c       --    -  g   c     u  a 
          ag guc gagcg agg aagagau  cacu gc gug ucaca gu g
          || ||| ||||| ||| |||||||  |||| || ||| ||||| ||  
          uc cag cucgc ucu UUCUCUA  GUGG CG CAC AGUgu ca c
---------g  -   u     u   U       UG    U  A   A     -  c 


Annotation confidence Not enough data
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Genome context
KB292771.1: 444003-444103 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cte-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-317

Accession MIMAT0009542
Description Capitella teleta cte-miR-317 mature miRNA
Sequence 61 - UGAACACAGCUGGUGGUAUCUCUUU - 85
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68