miRBase entry: lgi-mir-190

Stem-loop lgi-mir-190


Accession
MI0010127
Description
Lottia gigantea lgi-mir-190 precursor miRNA
Gene family
MIPF0000076; mir-190


Sequence

aagaguuugcugaucucuguuAGAUAUGUUUGAUAUAAUUGGUgguuaaugguuaaaaguccaccaaguaucaaacaugucacuacagaggucuguccuuu
.((((...((.(((((((((..((((((((((((((..(((((((...............)))))))))))))))))))))...))))))))).)).))))

Structure
a    uuu  u         -uA              AA       uuaaug 
 agag   gc gaucucugu   GAUAUGUUUGAUAU  UUGGUgg      g
 ||||   || |||||||||   ||||||||||||||  |||||||      u
 uuuc   ug cuggagaca   cuguacaaacuaug  aaccacc      u
-    --c  u         uca              --       ugaaaa 


Annotation confidence Not enough data
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Genome context
KB202544.1: 52934-53034 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-mir-190
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-miR-190

Accession MIMAT0009586
Description Lottia gigantea lgi-miR-190 mature miRNA
Sequence 22 - AGAUAUGUUUGAUAUAAUUGGU - 43
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68