miRBase entry: sko-mir-7

Stem-loop sko-mir-7


Accession
MI0010146
Description
Saccoglossus kowalevskii sko-mir-7 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

gugucacauaccauaUGGAAGACUAGUGAUUUUGUUGUugucaccuguuccaaacaAAAAAUCACAGUCUGCCAUUaugguguuug
....((.(((((((((((.(((((.((((((((.(((((.............)))))))))))))))))).))).)))))))).))

Structure
gugu  c        -   A     A        G     gucac 
    ca auaccaua UGG AGACU GUGAUUUU UUGUu     c
    || |||||||| ||| ||||| |||||||| |||||     u
    gu ugugguaU ACC UCUGA CACUAAAA Aacaa     g
----  u        U   G     -        -     accuu 


Annotation confidence Not enough data
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Genome context
GL010990.1: 410972-411057 [+]

Database links

Mature sko-miR-7-5p

Accession MIMAT0009608
Description Saccoglossus kowalevskii sko-miR-7-5p mature miRNA
Sequence 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
Evidence experimental
454 [1]

Mature sko-miR-7-3p

Accession MIMAT0019153
Description Saccoglossus kowalevskii sko-miR-7-3p mature miRNA
Sequence 57 - AAAAAUCACAGUCUGCCAUU - 76
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27