miRBase entry: sko-mir-200

Stem-loop sko-mir-200


Accession
MI0010147
Description
Saccoglossus kowalevskii sko-mir-200 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

gaugcgaugugaauucaauugacaucuuacccgacagcauuagacuuguuaugcauucucUAAUACUGUCUGGUAAUGAUGUUaauagauuucaccaucuc
.....((((((((.((.((((((((((((((.(((((.((((((..(((...)))...)))))).))))).))))).))))))))).)).)))).))))..

Structure
gaugc    -    u  a         -     c     c      -cu   u 
     gaug ugaa uc auugacauc uuacc gacag auuaga   ugu  
     |||| |||| || ||||||||| ||||| ||||| ||||||   ||| a
     cuac acuu ag uaaUUGUAG AAUGG CUGUC UAAUcu   acg  
---cu    c    u  a         U     U     A      cuu   u 


Annotation confidence Not enough data
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Genome context
GL011827.1: 167988-168088 [+]

Database links

Mature sko-miR-200

Accession MIMAT0009609
Description Saccoglossus kowalevskii sko-miR-200 mature miRNA
Sequence 61 - UAAUACUGUCUGGUAAUGAUGUU - 83
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68