miRBase entry: sko-mir-10

Stem-loop sko-mir-10


Accession
MI0010149
Description
Saccoglossus kowalevskii sko-mir-10 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

auauaucuccaccaaccucUACCCUGUAGAUCCGAAUUUGUGguacguacauuuucacgaauucguuucuaccggugacagguagcugcgaggacacaaca
......(((((.(.((((.((((..(((((..(((((((((((...........)))))))))))..))))).))))..)))).).)).))).........

Structure
---auauau   -  c a    -c    CU     UC           uacg 
         cuc ca c accu  UACC  GUAGA  CGAAUUUGUGg    u
         ||| || | ||||  ||||  |||||  |||||||||||    a
         gag gu g ugga  gugg  caucu  gcuuaagcacu    c
acaacacag   c  c a    ca    -c     uu           uuua 


Annotation confidence Not enough data
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Genome context
GL010946.1: 262516-262616 [+]

Database links

Mature sko-miR-10

Accession MIMAT0009611
Description Saccoglossus kowalevskii sko-miR-10 mature miRNA
Sequence 20 - UACCCUGUAGAUCCGAAUUUGUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68