Stem-loop sko-mir-29b

Accession

MI0010151

Description

Saccoglossus kowalevskii sko-mir-29b precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

ugaacucucugaccuuaggaaCCUGAUUUCAAACGGUGGAUAGAuuccauagcaacagucUAGCACCAUUUGAAAUCAGUGUuccuaguucaagaa
.....(((.(((.((.(((((((((((((((((.((((..((((((..........)))))).)))).))))))))))).)))))))).)))))).

Structure

ugaac   c   c  u      -           C    GA      ccau 
     ucu uga cu aggaaC CUGAUUUCAAA GGUG  UAGAuu    a
     ||| ||| || |||||| ||||||||||| ||||  ||||||     
     aga acu ga uccuUG GACUAAAGUUU CCAC  AUcuga    g
----a   -   u  -      U           A    -G      caac 

Annotation confidence Not enough data

Genome context

ACQM01008700.1: 2515-2610 [+]

Mature sko-miR-29b-3p

• Accession: MIMAT0009613
• Description: Saccoglossus kowalevskii sko-miR-29b-3p mature miRNA
• Sequence: 61 - UAGCACCAUUUGAAAUCAGUGU - 82
• Evidence: experimental ; 454 [1]

Mature sko-miR-29b-5p

• Accession: MIMAT0019154
• Description: Saccoglossus kowalevskii sko-miR-29b-5p mature miRNA
• Sequence: 22 - CCUGAUUUCAAACGGUGGAUAGA - 44
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27