miRBase entry: sko-mir-34

Stem-loop sko-mir-34


Accession
MI0010154
Description
Saccoglossus kowalevskii sko-mir-34 precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

gacuuacuauaugccacagugUGGCAGUGUGGUUAGCUGGUUGuuaauuauaauuucaACCAUCUGAUCAUCUGCCUAUAcagugacauaaccaaucaucc
.........((((.(((.(((((((((.((((((((.((((((.............)))))).))))))))))))).)))).))).))))...........

Structure
--gacuuacua    c   a    -     U        C      uuaau 
           uaug cac gugU GGCAG GUGGUUAG UGGUUG     u
           |||| ||| |||| ||||| |||||||| ||||||     a
           auac gug cAUA CCGUC UACUAGUC ACCAac     u
ccuacuaacca    a   a    U     -        U      uuuaa 


Annotation confidence Not enough data
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Genome context
GL013651.1: 114431-114531 [-]

Database links

Mature sko-miR-34-5p

Accession MIMAT0009616
Description Saccoglossus kowalevskii sko-miR-34-5p mature miRNA
Sequence 22 - UGGCAGUGUGGUUAGCUGGUUG - 43
Evidence experimental
454 [1]

Mature sko-miR-34-3p

Accession MIMAT0019155
Description Saccoglossus kowalevskii sko-miR-34-3p mature miRNA
Sequence 59 - ACCAUCUGAUCAUCUGCCUAUA - 80
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27