miRBase entry: sko-mir-100

Stem-loop sko-mir-100


Accession
MI0010161
Description
Saccoglossus kowalevskii sko-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

acaacuggcuggacuguguaAACCCGUAGAUCCGAACUUGUGuuagaguucggcucgcaagcucgcaucucugggucuaugccgucuuggcacaagcgauc
.....((.(.((((.(((((.(((((.((((.(((.(((((....((((...))))))))).))).)))).))))).))))).)))).).)).........

Structure
----acaac  g u    u     A     U    C   A     Guua    u 
         ug c ggac gugua ACCCG AGAU CGA CUUGU    gagu  
         || | |||| ||||| ||||| |||| ||| |||||    |||| c
         ac g ucug cguau ugggu ucua gcu gaacg    cucg  
cuagcgaac  g u    c     c     c    c   c     ----    g 


Annotation confidence Not enough data
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Genome context
GL017840.1: 24395-24495 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-100

Accession MIMAT0009623
Description Saccoglossus kowalevskii sko-miR-100 mature miRNA
Sequence 21 - AACCCGUAGAUCCGAACUUGUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68