miRBase entry: sko-mir-252a

Stem-loop sko-mir-252a


Accession
MI0010174
Description
Saccoglossus kowalevskii sko-mir-252a precursor miRNA
Gene family
MIPF0000285; mir-252


Sequence

caugacuggcugauccaauaCUAAGUACUAGUGCCGCAGGAGUcguauauuugaguaacccugucguacuugugcuuaacauaggaugugccaauauucau
......((((..((((.((..(((((((.(((((.((((((.(((......))).)...))))).))))).)))))))..)).))))..))))........

Structure
--caugac    ug    a  aC       U     C     --- G   ua 
        uggc  aucc au  UAAGUAC AGUGC GCAGG   A Ucg  u
        ||||  |||| ||  ||||||| ||||| |||||   | |||   
        accg  uagg ua  auucgug ucaug ugucc   u agu  a
uacuuaua    ug    a  ca       u     c     caa g   uu 


Annotation confidence Not enough data
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Genome context
GL013840.1: 13957-14057 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sko-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-252a

Accession MIMAT0009638
Description Saccoglossus kowalevskii sko-miR-252a mature miRNA
Sequence 21 - CUAAGUACUAGUGCCGCAGGAGU - 43
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68