miRBase entry: sko-mir-365

Stem-loop sko-mir-365


Accession
MI0010179
Description
Saccoglossus kowalevskii sko-mir-365 precursor miRNA


Sequence

uaugcguuuguggacuUGGGGUCUCAGAGAGAGCAUUCUGuguauuuuacaUAAUGCCCUUUGAAAUCCUAAAuguacaagggcuca
...((.((((((.(.(((((((.((((((.(.(((((.((((.....)))).)))))))))))).))))))).).)))))).))...

Structure
uau  g      g c       C      A A     C    u 
   gc uuugug a uUGGGGU UCAGAG G GCAUU UGug a
   || |||||| | ||||||| |||||| | ||||| |||| u
   cg gaacau u AAUCCUA AGUUUC C CGUAA acau u
acu  g      g A       A      - -     U    u 


Annotation confidence Not enough data
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Genome context
GL012752.1: 8972-9058 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sko-mir-365
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-365-3p

Accession MIMAT0009643
Description Saccoglossus kowalevskii sko-miR-365-3p mature miRNA
Sequence 52 - UAAUGCCCUUUGAAAUCCUAAA - 73
Evidence experimental
454 [1]

Mature sko-miR-365-5p

Accession MIMAT0019159
Description Saccoglossus kowalevskii sko-miR-365-5p mature miRNA
Sequence 17 - UGGGGUCUCAGAGAGAGCAUUCUG - 40
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27