miRBase entry: spu-mir-1

Stem-loop spu-mir-1


Accession
MI0010186
Description
Strongylocentrotus purpuratus spu-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

ccauaucccaugccauaacauacuucuuuagaauuccauacugaaucuccucaacucuaUGGAAUGUAAAGAAGUAUGUAUugaaacugggaccuc
.....(((((...((..(((((((((((((..((((((((.(((......)))....)))))))).)))))))))))))..))....)))))....

Structure
ccaua     -ugc  ua             ga        ---c   au 
     uccca    ca  acauacuucuuua  auuccaua    uga  c
     |||||    ||  |||||||||||||  ||||||||    |||   
     agggu    gu  UGUAUGAAGAAAU  UAAGGUau    acu  u
-cucc     caaa  UA             -G        cuca   cc 


Annotation confidence Not enough data
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Genome context
KN918585.1: 337411-337506 [+]

Database links

Mature spu-miR-1

Accession MIMAT0009650
Description Strongylocentrotus purpuratus spu-miR-1 mature miRNA
Sequence 60 - UGGAAUGUAAAGAAGUAUGUAU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68