miRBase entry: spu-mir-9

Stem-loop spu-mir-9


Accession
MI0010189
Description
Strongylocentrotus purpuratus spu-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

ucauacugacucugcuuuucUCUUUGGUUAUCUAGCUGUAUGagugaugucaaugcaucAUAAAGCUAGGUUACCAAAGAUaagugccuguugucacaugu
......((((.(.((.(((.((((((((.((((((((......(((((((....)))))))..)))))))).)))))))).))).))..)..)))).....

Structure
ucauac    -u -u  u   c        U        GUAUGa       c 
      ugac  c  gc uuu UCUUUGGU AUCUAGCU      gugaugu a
      ||||  |  || ||| |||||||| ||||||||      |||||||  
      acug  g  cg gaa AGAAACCA UGGAUCGA      UAcuacg a
-uguac    uu uc  u   U        U        ----AA       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KN915310.1: 590803-590903 [+]

Database links

Mature spu-miR-9-5p

Accession MIMAT0009653
Description Strongylocentrotus purpuratus spu-miR-9-5p mature miRNA
Sequence 21 - UCUUUGGUUAUCUAGCUGUAUG - 42
Evidence experimental
454 [1]

Mature spu-miR-9-3p

Accession MIMAT0009661
Description Strongylocentrotus purpuratus spu-miR-9-3p mature miRNA
Sequence 60 - AUAAAGCUAGGUUACCAAAGAU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68