miRBase entry: spu-mir-96

Stem-loop spu-mir-96


Accession
MI0010201
Description
Strongylocentrotus purpuratus spu-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96


Sequence

cuagucugUUUGGCACUAGCACAUUUUGCuguaccucgaaagaggcucauugucgugugcaagauauguuugugccaagccagauugga
((((((((((((((((.((((.(((((((((..((((....))))..)).........))))))).)))).)))))))).)))))))).

Structure
-        -        U    C       ---------  ua    g 
 cuagucug UUUGGCAC AGCA AUUUUGC         ug  ccuc a
 |||||||| |||||||| |||| |||||||         ||  ||||  
 gguuagac gaaccgug uugu uagaacg         ac  ggag a
a        c        u    a       ugugcuguu  uc    a 


Annotation confidence Not enough data
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Genome context
KN914066.1: 554245-554333 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-96

Accession MIMAT0009665
Description Strongylocentrotus purpuratus spu-miR-96 mature miRNA
Sequence 9 - UUUGGCACUAGCACAUUUUGC - 29
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68