miRBase entry: spu-mir-252a

Stem-loop spu-mir-252a


Accession
MI0010208
Description
Strongylocentrotus purpuratus spu-mir-252a precursor miRNA
Gene family
MIPF0000285; mir-252


Sequence

cacgugacuauguuccgucCUAAGUACUAGUGCCGUAGGUUaacugagaaggaaagugaagcuagacuauagcuucucagaccuguaguacuaguacuuaa
.(((.(((...))).)))..(((((((((((((..(((((...((((((((...(((........)))....)))))))))))))..))))))))))))).

Structure
cacgugacuauguuccgucC             CG     Uaa        -gaa   gaa 
                    UAAGUACUAGUGC  UAGGU   cugagaag    agu   g
                    |||||||||||||  |||||   ||||||||    |||    
                    auucaugaucaug  gucca   gacucuuc    uca   c
-------------------a             au     ---        gaua   gau 


Annotation confidence Not enough data
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Genome context
KN912884.1: 120521-120621 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-252a

Accession MIMAT0009672
Description Strongylocentrotus purpuratus spu-miR-252a mature miRNA
Sequence 20 - CUAAGUACUAGUGCCGUAGGUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68