miRBase entry: spu-mir-278

Stem-loop spu-mir-278


Accession
MI0010210
Description
Strongylocentrotus purpuratus spu-mir-278 precursor miRNA
Gene family
MIPF0000728; mir-278_2


Sequence

caaacugccucuucuccUGGAAUGAAAGCCUCGCCAAUCugucauuguuacuaagcuaggUCGGUGGGACUUUCGUUCGAUUagaagaugguagauacua
....(((((((((((..(.(((((((((.((((((.(((((.(...........).))))).)))))).))))))))).)..)))))).)))))......

Structure
--caaa     -      cc G         C      A     u auug 
      cugcc ucuucu  U GAAUGAAAG CUCGCC AUCug c    u
      ||||| ||||||  | ||||||||| |||||| ||||| |    u
      gaugg agaaga  A CUUGCUUUC GGGUGG Uggau g    a
aucaua     u      UU G         A      C     c aauc 


Annotation confidence Not enough data
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Genome context
KN919517.1: 187990-188089 [+]

Database links

Mature spu-miR-278-3p

Accession MIMAT0009674
Description Strongylocentrotus purpuratus spu-miR-278-3p mature miRNA
Sequence 61 - UCGGUGGGACUUUCGUUCGAUU - 82
Evidence experimental
454 [1]

Mature spu-miR-278-5p

Accession MIMAT0019163
Description Strongylocentrotus purpuratus spu-miR-278-5p mature miRNA
Sequence 18 - UGGAAUGAAAGCCUCGCCAAUC - 39
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27