miRBase entry: cte-mir-2d-1

Stem-loop cte-mir-2d-1


Accession
MI0010214
Description
Capitella teleta cte-mir-2d-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

cacccucauugagaaccugcacuugaucaagguggcugugucuuguguccacugcuucaAAUCACAGCCUGCUUUGGUCAUuugcugguuuuucaucacc
..........(((((((.(((..(((((((((((((((((..(((.((.....))..)))..))))))).))))))))))..))).))))))).......

Structure
cacccucauu       u   cu          -       uc   -u  c 
          gagaacc gca  ugaucaaggu ggcugug  uug  gu c
          ||||||| |||  |||||||||| |||||||  |||  || a
          uuuuugg cgu  ACUGGUUUCG CCGACAC  Aac  cg c
---ccacuac       u   uU          U       UA   uu  u 


Annotation confidence Not enough data
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Genome context
KB304652.1: 1031-1130 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-mir-2d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-2d

Accession MIMAT0009678
Description Capitella teleta cte-miR-2d mature miRNA
Sequence 60 - AAUCACAGCCUGCUUUGGUCAU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68