miRBase entry: aqu-mir-2014

Stem-loop aqu-mir-2014


Accession
MI0010222
Description
Amphimedon queenslandica aqu-mir-2014 precursor miRNA


Sequence

24575 reads, 161802 reads per million, 9 experiments
ugugguauugUAGGUCGGGCCUGGGGGGCAGGuggaaggaauggcggccaaaagcggcaagggagagugauggcugcacugcacuaguucucuuuugcugcugcgggcugccaaccuccUGCCAAACAAGUCCGAUCUACAagaccacgg
((((((.(((((((((((((.((...((((((....(((..((((((((...(((((((((((((((...(((.(((...)))))).)))))))))))))))...)))))))).)))))))))...)).))))))))))))).)))))).

Structure
-      a             C  GGG      ugga   aa        aaa               uga   c   a 
 uguggu uugUAGGUCGGGC UG   GGCAGG    agg  uggcggcc   agcggcaagggagag   ugg ugc  
 |||||| ||||||||||||| ||   ||||||    |||  ||||||||   |||||||||||||||   ||| ||| c
 gcacca aACAUCUAGCCUG AC   CCGUcc    ucc  accgucgg   ucgucguuuucucuu   auc acg  
g      g             A  AAA      ----   -a        gcg               --g   -   u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aqu-miR-2014-5p

Accession MIMAT0009686
Description Amphimedon queenslandica aqu-miR-2014-5p mature miRNA
Sequence 11 - UAGGUCGGGCCUGGGGGGCAGG - 32
Evidence experimental
454 [2]

Mature aqu-miR-2014-3p

Accession MIMAT0009687
Description Amphimedon queenslandica aqu-miR-2014-3p mature miRNA
Sequence 120 - UGCCAAACAAGUCCGAUCUACA - 141
Evidence experimental
454 [1-2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197