miRBase entry: aqu-mir-2018

Stem-loop aqu-mir-2018


Accession
MI0010226
Description
Amphimedon queenslandica aqu-mir-2018 precursor miRNA


Sequence

1924 reads, 27510 reads per million, 9 experiments
cagugUGUCGGAGCCGGAGGUUCCGGAgaaagauaaaagcccgugcaggcauuggaaugacauaaaccgguuguauugguuucguuccauuguuuggugcaacggcuuagccucCGGGACCUUGGACCUCGACACAcagug
..(((((((((.(.(.((((((((((((...(....(((((.(((((((((.((((((((....(((((((...))))))))))))))).))))).))))...)))))..))))))))))))).).).)))))))))....

Structure
--ca         A C G            aaa auaa     --c    -     u        caua       u 
    gugUGUCGG G C GAGGUUCCGGAg   g    aagcc   gugc aggca uggaauga    aaccggu  
    ||||||||| | | ||||||||||||   |    |||||   |||| ||||| ||||||||    ||||||| g
    cACACAGCU C G UUCCAGGGCcuc   c    uucgg   cgug uuugu accuugcu    uugguua  
guga         C A G            --- --ga     caa    g     u        ----       u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aqu-miR-2018-5p

Accession MIMAT0009694
Description Amphimedon queenslandica aqu-miR-2018-5p mature miRNA
Sequence 6 - UGUCGGAGCCGGAGGUUCCGGA - 27
Evidence experimental
454 [1-2]

Mature aqu-miR-2018-3p

Accession MIMAT0009695
Description Amphimedon queenslandica aqu-miR-2018-3p mature miRNA
Sequence 115 - CGGGACCUUGGACCUCGACACA - 136
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197