miRBase entry: cte-mir-1998

Stem-loop cte-mir-1998


Accession
MI0010238
Description
Capitella teleta cte-mir-1998 precursor miRNA


Sequence

cuggugguguauauuuccgcguccagacucuuugugguccugcaauggcaaauuaucgagUUGAACGCAGAGAUGUACAUCAccaacc
.((((((((((((((((.((((...(((((...(((((..(((....))).))))).)))))..)))).))))))))))))))))...

Structure
--c                c    cca     uuu     cc   a 
   uggugguguauauuuc gcgu   gacuc   guggu  ugc a
   |||||||||||||||| ||||   |||||   |||||  |||  
   accACUACAUGUAGAG CGCA   UUgag   uauua  acg u
cca                A    -AG     --c     -a   g 


Annotation confidence Not enough data
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Genome context
KB299619.1: 172644-172731 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-mir-1998
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-1998

Accession MIMAT0009709
Description Capitella teleta cte-miR-1998 mature miRNA
Sequence 61 - UUGAACGCAGAGAUGUACAUCA - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68