miRBase entry: lgi-mir-2001

Stem-loop lgi-mir-2001

Accession

MI0010260

Description

Lottia gigantea lgi-mir-2001 precursor miRNA

Gene family

MIPF0000711; mir-2001

Sequence

uaccgugaccuUUGUGACCGUUAUAAUGGGCAUUuagaauugaagugcuccuuauuacgaucagaagggucucguuc
...((.(((((((.(((.(((.((((.((((((((.......)))))))).)))).))).))).))))))).))...

Structure

uac  u       G   C   U    U        ag 
   cg gaccuUU UGA CGU AUAA GGGCAUUu  a
   || ||||||| ||| ||| |||| ||||||||  a
   gc cugggaa acu gca uauu cucgugaa  u
cuu  u       g   a   u    c        gu

Annotation confidence Not enough data

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Genome context

KB200702.1: 486292-486368 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from lgi-mir-2001

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lgi-miR-2001

Accession	MIMAT0009731
Description	Lottia gigantea lgi-miR-2001 mature miRNA
Sequence	12 - UUGUGACCGUUAUAAUGGGCAUU - 34
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68