miRBase entry: lgi-mir-1990

Stem-loop lgi-mir-1990

Accession

MI0010261

Description

Lottia gigantea lgi-mir-1990 precursor miRNA

Gene family

MIPF0000718; mir-1990

Sequence

auucgugcAGUAAGUUGAUGGGGUCCCAGGuuauuuugucccgggacuacgucaacuacuagcacgcgc
...(((((((((.(((((((.((((((.((.........)).)))))).))))))))))).)))))...

Structure

auu     -    A       G      A  uua 
   cgugc AGUA GUUGAUG GGUCCC GG   u
   ||||| |||| ||||||| |||||| ||   u
   gcacg ucau caacugc ucaggg cc   u
cgc     a    -       a      c  ugu

Annotation confidence Not enough data

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Genome context

KB202237.1: 82019-82087 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lgi-mir-1990

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lgi-miR-1990

Accession	MIMAT0009732
Description	Lottia gigantea lgi-miR-1990 mature miRNA
Sequence	9 - AGUAAGUUGAUGGGGUCCCAGG - 30
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68