miRBase entry: sko-mir-2001

Stem-loop sko-mir-2001


Accession
MI0010264
Description
Saccoglossus kowalevskii sko-mir-2001 precursor miRNA


Sequence

acguugUUGUGACCGUUAUAAUGGGCAUaucaagcaccaaugcaaucauaaugccuacuguagcguuuacaacaaug
.(((((((((((.(((((((.(((((((.....(((....))).......))))))).))))))).)))))))))))

Structure
a           C       A       --aucaa   c 
 cguugUUGUGA CGUUAUA UGGGCAU       gca c
 ||||||||||| ||||||| |||||||       |||  
 guaacaacauu gcgaugu auccgua       cgu a
-           u       c       auacuaa   a 


Annotation confidence Not enough data
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Genome context
GL013840.1: 20661-20737 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sko-mir-2001
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-2001

Accession MIMAT0009735
Description Saccoglossus kowalevskii sko-miR-2001 mature miRNA
Sequence 7 - UUGUGACCGUUAUAAUGGGCAU - 28
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68